Variant report

Variant	rs2765817
Chromosome Location	chr9:98069780-98069781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98062934..98065072-chr9:98067930..98070513,2	K562	blood:
2	chr9:98067922..98070273-chr9:98076676..98079113,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1623009	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16905568	1.00[JPT][hapmap]
rs16909877	1.00[JPT][hapmap]
rs173339	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs242448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs356662	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780560	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs400727	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs420089	0.80[EUR][1000 genomes]
rs4647513	0.91[YRI][hapmap]
rs4743989	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744440	0.83[EUR][1000 genomes]
rs475413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs607105	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs648615	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs651009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038007	0.80[AFR][1000 genomes]
rs9299427	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98060400-98075000	Weak transcription	NHEK	skin
2	chr9:98063400-98069800	Weak transcription	Fetal Kidney	kidney
3	chr9:98066200-98075200	Weak transcription	Left Ventricle	heart
4	chr9:98066800-98074800	Weak transcription	Thymus	Thymus
5	chr9:98067000-98075200	Weak transcription	Lung	lung
6	chr9:98067400-98070400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:98067600-98070400	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:98067800-98074200	Weak transcription	GM12878-XiMat	blood
9	chr9:98068200-98070400	Enhancers	Liver	Liver
10	chr9:98068200-98070400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:98068200-98070800	Enhancers	Fetal Intestine Small	intestine
12	chr9:98068400-98075200	Weak transcription	HMEC	breast
13	chr9:98068600-98071000	Enhancers	Fetal Intestine Large	intestine
14	chr9:98068800-98069800	Weak transcription	HepG2	liver
15	chr9:98068800-98070000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:98068800-98070200	Enhancers	HSMM	muscle
17	chr9:98068800-98075200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:98068800-98075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:98068800-98075200	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:98068800-98075200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:98068800-98075400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:98069000-98070200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:98069000-98075000	Weak transcription	Fetal Stomach	stomach
24	chr9:98069000-98075200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:98069000-98075200	Weak transcription	Fetal Lung	lung
26	chr9:98069000-98075200	Weak transcription	HUVEC	blood vessel
27	chr9:98069000-98075200	Weak transcription	NHLF	lung
28	chr9:98069000-98077200	Weak transcription	Hela-S3	cervix
29	chr9:98069000-98077400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:98069000-98077400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:98069200-98069800	Enhancers	Colonic Mucosa	Colon
32	chr9:98069400-98075200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:98069400-98075200	Weak transcription	Pancreas	Pancrea
34	chr9:98069400-98075200	Weak transcription	Psoas Muscle	Psoas
35	chr9:98069600-98070000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr9:98069600-98070000	Weak transcription	Small Intestine	intestine
37	chr9:98069600-98070200	Enhancers	A549	lung
38	chr9:98069600-98070200	Enhancers	NHDF-Ad	bronchial
39	chr9:98069600-98070400	Enhancers	Muscle Satellite Cultured Cells	--

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