Variant report

Variant	rs1624840
Chromosome Location	chr14:42470003-42470004
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12435950	0.84[EUR][1000 genomes]
rs1471852	0.81[AMR][1000 genomes]
rs1684683	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1763277	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1763283	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2029184	0.84[AMR][1000 genomes]
rs7359059	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901740	chr14:42386859-42477256	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv522059	chr14:42467597-42477256	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42469800-42470200	Weak transcription	Hela-S3	cervix
2	chr14:42469800-42471000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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