Variant report

Variant	rs1625128
Chromosome Location	chr19:37464547-37464548
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37463031..37465781-chr19:37707432..37709239,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188283	Chromatin interaction
ENSG00000245680	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	esv1828064	chr19:37463270-37467305	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
18	esv1808096	chr19:37463582-37464848	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37463200-37464600	Active TSS	Brain Angular Gyrus	brain
2	chr19:37463200-37464600	Active TSS	Brain Anterior Caudate	brain
3	chr19:37463200-37464600	Active TSS	Brain Cingulate Gyrus	brain
4	chr19:37463200-37464600	Active TSS	Placenta Amnion	Placenta Amnion
5	chr19:37463200-37464600	Active TSS	NHEK	skin
6	chr19:37463200-37464800	Active TSS	Fetal Intestine Small	intestine
7	chr19:37463200-37465000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:37463200-37465000	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr19:37463200-37465200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr19:37463200-37465200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr19:37463400-37464600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr19:37463400-37464600	Active TSS	Primary T cells from cord blood	blood
13	chr19:37463400-37464600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:37463400-37464600	Active TSS	Psoas Muscle	Psoas
15	chr19:37463400-37464600	Active TSS	Rectal Smooth Muscle	rectum
16	chr19:37463400-37464600	Active TSS	Right Atrium	heart
17	chr19:37463400-37464800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:37463400-37464800	Active TSS	HSMMtube	muscle
19	chr19:37463400-37465000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:37463400-37465000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:37463400-37465000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr19:37463400-37465000	Active TSS	Fetal Intestine Large	intestine
25	chr19:37463400-37465000	Active TSS	Osteobl	bone
26	chr19:37463400-37465200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr19:37463400-37465200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:37463400-37465200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37463400-37465200	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr19:37463400-37465200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr19:37463400-37465200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:37463400-37465200	ZNF genes & repeats	Lung	lung
33	chr19:37463400-37465400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr19:37463400-37465400	Flanking Active TSS	Fetal Muscle Trunk	muscle
35	chr19:37463600-37464600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:37463600-37464600	Active TSS	Muscle Satellite Cultured Cells	--
37	chr19:37463600-37464600	Active TSS	Brain Substantia Nigra	brain
38	chr19:37463600-37464600	Active TSS	Esophagus	oesophagus
39	chr19:37463600-37464600	Active TSS	Fetal Lung	lung
40	chr19:37463600-37464600	Active TSS	Ovary	ovary
41	chr19:37463600-37464600	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr19:37463600-37464800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr19:37463600-37464800	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr19:37463600-37464800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
45	chr19:37463600-37464800	Active TSS	Aorta	Aorta
46	chr19:37463600-37465000	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr19:37463600-37465000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr19:37463600-37465000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr19:37463600-37465000	Active TSS	Fetal Kidney	kidney
50	chr19:37463600-37465000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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