Variant report

Variant	rs1626109
Chromosome Location	chr21:17605238-17605239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1533	1.00[CEU][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes]
rs1534	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1689059	0.81[CHD][hapmap]
rs16994832	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes]
rs238973	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs238974	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs238976	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs238980	1.00[CEU][hapmap]
rs238983	1.00[CEU][hapmap]
rs238988	1.00[CEU][hapmap]
rs238990	1.00[CEU][hapmap]
rs238992	1.00[CEU][hapmap]
rs239078	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs239080	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2823639	0.81[CHD][hapmap]
rs2823644	0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs2823648	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2823657	0.81[CHD][hapmap]
rs2823672	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs2823675	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823676	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823677	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823678	0.91[EUR][1000 genomes]
rs2823679	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823682	1.00[CEU][hapmap]
rs2823683	1.00[CEU][hapmap]
rs62219536	0.88[ASN][1000 genomes]
rs62219539	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62221866	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62221867	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62221868	0.96[EUR][1000 genomes]
rs6517693	0.95[CHD][hapmap]
rs7279847	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7282249	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8127653	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs8131686	1.00[CEU][hapmap]
rs8132985	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
2	chr21:17585000-17612200	Weak transcription	Adipose Nuclei	Adipose
3	chr21:17598000-17622200	Weak transcription	Ovary	ovary
4	chr21:17598000-17622400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr21:17602000-17614000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:17602200-17606000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr21:17603000-17608000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr21:17604200-17607400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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