Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1533	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1534	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1626109	0.91[EUR][1000 genomes]
rs16994832	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs238973	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs238974	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs238976	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs238981	0.80[ASN][1000 genomes]
rs239078	0.91[EUR][1000 genomes]
rs239080	0.90[EUR][1000 genomes]
rs2823672	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823675	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823676	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823679	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823684	0.82[ASN][1000 genomes]
rs62219539	0.87[EUR][1000 genomes]
rs62221866	0.87[EUR][1000 genomes]
rs62221867	0.87[EUR][1000 genomes]
rs62221868	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7282249	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17584400-17619400	Weak transcription	Hela-S3	cervix
2	chr21:17598000-17622200	Weak transcription	Ovary	ovary
3	chr21:17598000-17622400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:17602000-17614000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr21:17606200-17622200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr21:17611400-17613800	Weak transcription	Fetal Brain Male	brain
7	chr21:17612000-17613400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr21:17612200-17613600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:17612400-17613800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr21:17612400-17613800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr21:17612600-17613800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr21:17612600-17613800	Weak transcription	Fetal Heart	heart
13	chr21:17612600-17618800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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