Variant report

Variant	rs162620
Chromosome Location	chr9:102065453-102065454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
KRT8P11	TF binding region
ENSG00000106803	Chromatin interaction
ENSG00000237461	Chromatin interaction
ENSG00000119523	Chromatin interaction
ENSG00000119508	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10819643	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1622127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162622	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1699415	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs431228	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62562443	0.93[ASN][1000 genomes]
rs7047384	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs72740635	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs162620	KRT8P11	cis	Muscle Skeletal	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102061800-102066200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:102062200-102066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:102062400-102066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:102062600-102065600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:102064200-102066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:102065200-102065600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:102065200-102066200	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links