Variant report

Variant	rs162622
Chromosome Location	chr9:102064302-102064303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10819643	0.98[ASN][1000 genomes]
rs1622127	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs162620	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs162621	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1699415	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs398704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431228	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62562443	0.93[ASN][1000 genomes]
rs7047384	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs723171	0.94[EUR][1000 genomes]
rs72740635	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs162622	KRT8P11	cis	Muscle Skeletal	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102059200-102068600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:102061800-102066200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:102061800-102069400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:102062200-102066400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:102062400-102065200	Weak transcription	NHLF	lung
6	chr9:102062400-102066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:102062400-102070200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:102062600-102065600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:102063200-102064400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:102063600-102065200	Enhancers	K562	blood
11	chr9:102064200-102066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links