Variant report

Variant	rs1627354
Chromosome Location	chr7:107677984-107677985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr7:107677622-107678064	K562	blood:	n/a	n/a
2	BHLHE40	chr7:107677818-107678031	K562	blood:	n/a	n/a
3	MYC	chr7:107677665-107678126	K562	blood:	n/a	n/a
4	RFX5	chr7:107677770-107678109	K562	blood:	n/a	n/a
5	TEAD4	chr7:107677525-107678006	K562	blood:	n/a	n/a
6	GATA2	chr7:107677604-107678002	SH-SY5Y	brain:	n/a	chr7:107677806-107677813 chr7:107677621-107677632 chr7:107677795-107677812 chr7:107677801-107677817 chr7:107677806-107677813 chr7:107677806-107677813
7	TEAD4	chr7:107677528-107678040	K562	blood:	n/a	n/a
8	TAL1	chr7:107677583-107678037	K562	blood:	n/a	chr7:107677785-107677794 chr7:107677795-107677813 chr7:107677782-107677797 chr7:107677785-107677796 chr7:107677782-107677797
9	ZMIZ1	chr7:107677618-107678026	K562	blood:	n/a	n/a
10	JUND	chr7:107677660-107678049	K562	blood:	n/a	n/a
11	KAP1	chr7:107677766-107678026	K562	blood:	n/a	n/a
12	GATA3	chr7:107677565-107677993	SH-SY5Y	brain:	n/a	chr7:107677806-107677813 chr7:107677621-107677632 chr7:107677795-107677812 chr7:107677801-107677817 chr7:107677806-107677813 chr7:107677806-107677813
13	MAFK	chr7:107677626-107678106	K562	blood:	n/a	n/a
14	RCOR1	chr7:107677680-107678065	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107677483..107679632-chr7:107703067..107705427,2	K562	blood:

Variant related genes	Relation type
LAMB4	TF binding region
ENSG00000216085	TF binding region
ENSG00000091128	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10226708	0.88[GIH][hapmap];0.90[TSI][hapmap]
rs10242313	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268853	0.88[GIH][hapmap];0.90[TSI][hapmap]
rs1109110	0.88[GIH][hapmap];0.90[TSI][hapmap]
rs11974886	0.88[GIH][hapmap];0.90[TSI][hapmap]
rs1613001	1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1613597	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1614188	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616041	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1624720	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636942	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636943	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636944	0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs1636945	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636946	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636947	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636948	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636949	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636950	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636951	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636954	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636955	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636956	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636957	0.90[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs1636958	0.89[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs17154911	0.88[GIH][hapmap];0.90[TSI][hapmap]
rs1732140	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732142	0.91[EUR][1000 genomes]
rs1732146	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732147	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732149	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732150	0.91[EUR][1000 genomes]
rs1732151	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732152	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732153	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732154	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732156	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732157	1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732159	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732160	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732161	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732162	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732163	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2528693	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2528694	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2528696	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2528697	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2528698	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701044	0.94[EUR][1000 genomes]
rs2701045	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701046	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701047	0.86[ASN][1000 genomes]
rs2701048	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900124	0.91[EUR][1000 genomes]
rs57497254	0.92[EUR][1000 genomes]
rs73424716	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690688	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107676800-107678600	Enhancers	K562	blood
2	chr7:107677600-107678000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:107677800-107678000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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