Variant report

Variant	rs2701044
Chromosome Location	chr7:107679380-107679381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr7:107679264-107679471	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:107669952..107672823-chr7:107678022..107680411,2	K562	blood:
2	chr7:107678130..107680022-chr7:107681206..107684809,3	K562	blood:
3	chr7:107674851..107676617-chr7:107678396..107680001,2	MCF-7	breast:
4	chr7:107677483..107679632-chr7:107703067..107705427,2	K562	blood:

Variant related genes	Relation type
LAMB4	TF binding region
ENSG00000216085	TF binding region
ENSG00000091128	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10242313	0.80[EUR][1000 genomes]
rs1613001	0.89[EUR][1000 genomes]
rs1613597	0.80[EUR][1000 genomes]
rs1614188	0.80[EUR][1000 genomes]
rs1616041	0.80[EUR][1000 genomes]
rs1624720	0.90[EUR][1000 genomes]
rs1627354	0.94[EUR][1000 genomes]
rs1636942	0.80[EUR][1000 genomes]
rs1636943	0.80[EUR][1000 genomes]
rs1636944	0.80[EUR][1000 genomes]
rs1636945	0.80[EUR][1000 genomes]
rs1636946	0.80[EUR][1000 genomes]
rs1636947	0.80[EUR][1000 genomes]
rs1636948	0.80[EUR][1000 genomes]
rs1636949	0.83[EUR][1000 genomes]
rs1636950	0.80[EUR][1000 genomes]
rs1636954	0.89[EUR][1000 genomes]
rs1636955	0.89[EUR][1000 genomes]
rs1636956	0.89[EUR][1000 genomes]
rs1636957	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636958	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732140	0.89[EUR][1000 genomes]
rs1732142	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732146	0.80[EUR][1000 genomes]
rs1732147	0.80[EUR][1000 genomes]
rs1732149	0.89[EUR][1000 genomes]
rs1732150	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1732151	0.80[EUR][1000 genomes]
rs1732152	0.80[EUR][1000 genomes]
rs1732154	0.80[EUR][1000 genomes]
rs1732156	0.89[EUR][1000 genomes]
rs1732162	0.80[EUR][1000 genomes]
rs1732163	0.80[EUR][1000 genomes]
rs2528693	0.89[EUR][1000 genomes]
rs2528694	0.89[EUR][1000 genomes]
rs2528696	0.89[EUR][1000 genomes]
rs2528697	0.85[EUR][1000 genomes]
rs2528698	0.85[EUR][1000 genomes]
rs2701045	0.87[EUR][1000 genomes]
rs34900124	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57497254	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424716	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107678600-107680800	Weak transcription	K562	blood
2	chr7:107679200-107679800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links