Variant report
| Variant | rs1627623 |
|---|---|
| Chromosome Location | chr12:42840978-42840979 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42720800-42844400 | Weak transcription | Small Intestine | intestine |
| 2 | chr12:42816200-42858200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 3 | chr12:42816800-42862400 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 4 | chr12:42820000-42858200 | Weak transcription | Gastric | stomach |
| 5 | chr12:42820200-42853000 | Weak transcription | Fetal Heart | heart |
| 6 | chr12:42821000-42844000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 7 | chr12:42826000-42842400 | Weak transcription | HSMM | muscle |
| 8 | chr12:42826400-42859000 | Weak transcription | Fetal Brain Male | brain |
| 9 | chr12:42826600-42858200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 10 | chr12:42831800-42876400 | Weak transcription | Psoas Muscle | Psoas |
| 11 | chr12:42832800-42845000 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 12 | chr12:42833200-42841000 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 13 | chr12:42833600-42841400 | Strong transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 14 | chr12:42834200-42841200 | Strong transcription | Primary T helper naive cells fromperipheralblood | blood |
| 15 | chr12:42834200-42843200 | Strong transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 16 | chr12:42834200-42859600 | Weak transcription | Brain Substantia Nigra | brain |
| 17 | chr12:42834400-42842400 | Strong transcription | Primary T helper cells PMA-I stimulated | -- |
| 18 | chr12:42834400-42843000 | Strong transcription | Duodenum Mucosa | Duodenum |
| 19 | chr12:42834400-42843000 | Strong transcription | Fetal Thymus | thymus |
| 20 | chr12:42834800-42841600 | Strong transcription | Fetal Muscle Leg | muscle |
| 21 | chr12:42834800-42842800 | Strong transcription | Primary T cells fromperipheralblood | blood |
| 22 | chr12:42834800-42843200 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 23 | chr12:42835000-42841000 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
| 24 | chr12:42835000-42841400 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 25 | chr12:42835000-42841600 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 26 | chr12:42835000-42842200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 27 | chr12:42835400-42843200 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 28 | chr12:42836000-42875800 | Weak transcription | Stomach Mucosa | stomach |
| 29 | chr12:42836600-42841000 | Strong transcription | Ovary | ovary |
| 30 | chr12:42836600-42853000 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 31 | chr12:42836800-42844000 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
| 32 | chr12:42836800-42853000 | Weak transcription | Right Ventricle | heart |
| 33 | chr12:42836800-42858800 | Weak transcription | Brain Angular Gyrus | brain |
| 34 | chr12:42837000-42842600 | Weak transcription | Pancreas | Pancrea |
| 35 | chr12:42837000-42842800 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 36 | chr12:42837000-42844000 | Weak transcription | NHLF | lung |
| 37 | chr12:42837000-42845400 | Weak transcription | Hela-S3 | cervix |
| 38 | chr12:42837000-42853200 | Weak transcription | NHEK | skin |
| 39 | chr12:42837000-42853800 | Weak transcription | Lung | lung |
| 40 | chr12:42837000-42858000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 41 | chr12:42837000-42858000 | Weak transcription | Aorta | Aorta |
| 42 | chr12:42837000-42858200 | Weak transcription | Rectal Smooth Muscle | rectum |
| 43 | chr12:42837000-42868800 | Weak transcription | Esophagus | oesophagus |
| 44 | chr12:42837200-42844000 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 45 | chr12:42837200-42844200 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 46 | chr12:42837200-42863200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 47 | chr12:42837400-42842400 | Weak transcription | Brain Hippocampus Middle | brain |
| 48 | chr12:42837400-42842600 | Strong transcription | Primary T helper cells fromperipheralblood | blood |
| 49 | chr12:42837400-42844000 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 50 | chr12:42837400-42848000 | Weak transcription | HepG2 | liver |
