Variant report

Variant	rs1882666
Chromosome Location	chr12:42758783-42758784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:42719576..42721367-chr12:42758087..42760933,2	MCF-7	breast:
2	chr12:42757559..42759561-chr12:42762947..42765091,2	MCF-7	breast:
3	chr12:42744561..42747064-chr12:42757512..42759146,2	K562	blood:

Variant related genes	Relation type
ENSG00000134283	Chromatin interaction
ENSG00000139168	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10785338	1.00[YRI][hapmap]
rs1627623	1.00[MKK][hapmap]
rs1669933	0.89[YRI][hapmap]
rs1669934	1.00[MKK][hapmap]
rs1669938	1.00[MKK][hapmap]
rs2708062	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048971	chr12:42651976-42801204	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42720800-42844400	Weak transcription	Small Intestine	intestine
2	chr12:42721600-42769000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:42721600-42778600	Weak transcription	Spleen	Spleen
4	chr12:42721600-42800800	Weak transcription	Psoas Muscle	Psoas
5	chr12:42721600-42803600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:42721800-42769600	Weak transcription	Brain Substantia Nigra	brain
7	chr12:42721800-42769800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:42721800-42797000	Weak transcription	NHLF	lung
9	chr12:42721800-42803600	Weak transcription	Gastric	stomach
10	chr12:42722000-42769600	Weak transcription	Brain Anterior Caudate	brain
11	chr12:42722000-42769600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:42722000-42772600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr12:42722000-42793200	Weak transcription	Fetal Kidney	kidney
14	chr12:42722200-42769200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr12:42730800-42769600	Weak transcription	NH-A	brain
16	chr12:42731000-42768800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:42731400-42769600	Weak transcription	Fetal Lung	lung
18	chr12:42731800-42770400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:42732200-42781200	Weak transcription	Fetal Brain Female	brain
20	chr12:42732200-42794400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr12:42732400-42763600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:42732400-42769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:42733400-42796800	Weak transcription	Brain Hippocampus Middle	brain
24	chr12:42738000-42787400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr12:42738200-42823200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr12:42742600-42758800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:42745200-42758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:42746000-42778400	Weak transcription	Fetal Brain Male	brain
29	chr12:42746600-42769800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr12:42747400-42768800	Weak transcription	NHDF-Ad	bronchial
31	chr12:42747600-42769000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:42748200-42763600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr12:42750200-42762000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:42750400-42758800	Weak transcription	Right Ventricle	heart
35	chr12:42750400-42763000	Weak transcription	Colon Smooth Muscle	Colon
36	chr12:42750400-42768600	Weak transcription	Fetal Intestine Large	intestine
37	chr12:42750400-42768600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr12:42750400-42768800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr12:42750400-42769000	Weak transcription	Ovary	ovary
40	chr12:42750400-42769000	Weak transcription	Osteobl	bone
41	chr12:42750400-42769200	Weak transcription	Left Ventricle	heart
42	chr12:42750400-42769400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr12:42750400-42769600	Weak transcription	HSMMtube	muscle
44	chr12:42750400-42770200	Weak transcription	Fetal Muscle Leg	muscle
45	chr12:42750400-42770200	Weak transcription	Fetal Stomach	stomach
46	chr12:42750400-42770200	Weak transcription	Thymus	Thymus
47	chr12:42750600-42760600	Weak transcription	Fetal Heart	heart
48	chr12:42750600-42766000	Weak transcription	Aorta	Aorta
49	chr12:42750600-42769400	Weak transcription	Placenta	Placenta
50	chr12:42750800-42769200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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