The 2.0 version of rSNPBase

Variant report

Variant rs162851
Chromosome Location chr5:16477561-16477562
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16467400-16478000 Weak transcription Fetal Muscle Trunk muscle
2 chr5:16467600-16479200 Weak transcription Primary B cells from cord blood blood
3 chr5:16468000-16481800 Weak transcription Fetal Thymus thymus
4 chr5:16468200-16477800 Weak transcription Brain Anterior Caudate brain
5 chr5:16468200-16480200 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr5:16468200-16480600 Weak transcription Fetal Intestine Small intestine
7 chr5:16468200-16481000 Weak transcription Brain Hippocampus Middle brain
8 chr5:16468200-16481600 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr5:16468200-16482000 Weak transcription Primary T cells fromperipheralblood blood
10 chr5:16468200-16483200 Weak transcription A549 lung
11 chr5:16468200-16483400 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr5:16468200-16484000 Weak transcription Small Intestine intestine
13 chr5:16468200-16485000 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr5:16468200-16487400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr5:16468200-16489600 Weak transcription Brain Cingulate Gyrus brain
16 chr5:16468200-16490800 Weak transcription Right Ventricle heart
17 chr5:16468400-16480800 Weak transcription HSMM muscle
18 chr5:16468400-16481000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:16468400-16493000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr5:16468600-16481000 Weak transcription NHDF-Ad bronchial
21 chr5:16468600-16481000 Weak transcription NHEK skin
22 chr5:16468800-16479800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr5:16468800-16481200 Weak transcription HMEC breast
24 chr5:16469800-16480800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr5:16469800-16489800 Weak transcription Brain Inferior Temporal Lobe brain
26 chr5:16470000-16486800 Weak transcription Brain Angular Gyrus brain
27 chr5:16470000-16486800 Weak transcription Gastric stomach
28 chr5:16470000-16486800 Weak transcription Pancreas Pancrea
29 chr5:16470000-16486800 Weak transcription Psoas Muscle Psoas
30 chr5:16470000-16490200 Weak transcription Fetal Muscle Leg muscle
31 chr5:16470400-16489000 Weak transcription Fetal Brain Male brain
32 chr5:16470800-16478400 Weak transcription Brain Germinal Matrix brain
33 chr5:16472800-16483400 Strong transcription Skeletal Muscle Female skeletal muscle
34 chr5:16474000-16478200 Strong transcription Liver Liver
35 chr5:16474800-16477800 Strong transcription Skeletal Muscle Male skeletal muscle
36 chr5:16474800-16478200 Strong transcription Primary T cells from cord blood blood
37 chr5:16475000-16477600 Strong transcription Primary T helper cells PMA-I stimulated --
38 chr5:16475200-16478200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr5:16475400-16481600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:16475400-16483800 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr5:16475400-16495200 Weak transcription Thymus Thymus
42 chr5:16475600-16481200 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr5:16475800-16488800 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr5:16476400-16477600 Weak transcription Fetal Heart heart
45 chr5:16476600-16477600 Strong transcription Left Ventricle heart
46 chr5:16476600-16478200 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr5:16476800-16478600 Strong transcription Fetal Intestine Large intestine
48 chr5:16476800-16481200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr5:16476800-16482600 Weak transcription Duodenum Mucosa Duodenum
50 chr5:16477400-16477600 Enhancers K562 blood

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Last update: Aug 31, 2015