Variant report

Variant	rs26743
Chromosome Location	chr5:16667003-16667004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16616700..16617279-chr5:16666695..16667459,2	MCF-7	breast:
2	chr5:16552594..16553429-chr5:16666387..16667201,2	MCF-7	breast:
3	chr5:16489048..16489981-chr5:16666700..16667736,8	MCF-7	breast:
4	chr5:16552702..16553520-chr5:16666199..16667543,5	MCF-7	breast:
5	chr5:16492613..16493345-chr5:16666414..16667024,2	MCF-7	breast:
6	chr5:16491553..16492366-chr5:16666413..16667129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154153	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13340373	1.00[AMR][1000 genomes]
rs162851	1.00[AMR][1000 genomes]
rs59897191	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16655800-16670600	Weak transcription	Esophagus	oesophagus
2	chr5:16657000-16668000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:16658200-16670400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:16658800-16672600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:16661600-16689400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:16661800-16700000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:16662800-16669800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:16663000-16668200	Weak transcription	Hela-S3	cervix
9	chr5:16663000-16671400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:16663000-16674800	Weak transcription	Aorta	Aorta
11	chr5:16663000-16712400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:16663200-16667400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:16663200-16673000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:16663400-16676600	Strong transcription	A549	lung
15	chr5:16663600-16667200	Enhancers	Fetal Thymus	thymus
16	chr5:16663600-16669800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:16663600-16670000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:16663600-16695400	Strong transcription	Fetal Intestine Small	intestine
19	chr5:16663800-16667400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:16663800-16669200	Strong transcription	NHEK	skin
21	chr5:16663800-16669400	Strong transcription	HMEC	breast
22	chr5:16663800-16669800	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr5:16663800-16676600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr5:16663800-16690800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:16663800-16694400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:16663800-16698000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:16663800-16702400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:16663800-16713400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:16664000-16669200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:16664000-16669600	Strong transcription	HUVEC	blood vessel
31	chr5:16664000-16669600	Strong transcription	NH-A	brain
32	chr5:16664000-16671200	Genic enhancers	Fetal Lung	lung
33	chr5:16664000-16676800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:16664000-16701000	Strong transcription	Fetal Intestine Large	intestine
35	chr5:16664000-16702000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr5:16664000-16702200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:16664000-16702400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:16664200-16702200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:16664600-16690600	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr5:16664800-16674600	Weak transcription	Small Intestine	intestine
41	chr5:16664800-16677600	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr5:16665000-16667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:16665000-16668000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr5:16665200-16667600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:16665200-16667800	Enhancers	Fetal Heart	heart
46	chr5:16665600-16667600	Genic enhancers	HSMMtube	muscle
47	chr5:16665600-16667800	Enhancers	Stomach Mucosa	stomach
48	chr5:16665600-16667800	Strong transcription	NHDF-Ad	bronchial
49	chr5:16665600-16669000	Strong transcription	HepG2	liver
50	chr5:16665600-16669400	Strong transcription	Osteobl	bone

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