Variant report

Variant	rs1628793
Chromosome Location	chr19:51644922-51644923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51639297..51641534-chr19:51642659..51645180,2	K562	blood:
2	chr19:51642904..51644998-chr19:51646441..51648903,3	K562	blood:

Variant related genes	Relation type
ENSG00000267895	Chromatin interaction
ENSG00000267990	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1710362	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1710375	0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs182126	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs182127	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs183893	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455064	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs273654	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs273655	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs273656	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273657	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs273658	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs273660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs273661	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs273662	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs273663	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs273664	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273666	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273667	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273668	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273669	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273671	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273672	1.00[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273673	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs273674	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs273675	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs59767553	0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51634000-51645000	Weak transcription	Right Atrium	heart
2	chr19:51637800-51648600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr19:51639000-51645400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:51640600-51645600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:51641200-51646000	Enhancers	Primary B cells from cord blood	blood
6	chr19:51641400-51654000	Weak transcription	Pancreas	Pancrea
7	chr19:51641600-51645600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr19:51641600-51645800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:51643200-51647000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr19:51643400-51645200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:51643400-51646000	Enhancers	Placenta	Placenta
12	chr19:51643600-51645800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:51643800-51645600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr19:51644200-51645200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr19:51644400-51645800	Enhancers	Primary hematopoietic stem cells	blood
16	chr19:51644600-51645000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr19:51644600-51645200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr19:51644600-51645200	Bivalent Enhancer	Adipose Nuclei	Adipose
19	chr19:51644600-51645200	Enhancers	Brain Hippocampus Middle	brain
20	chr19:51644600-51645200	Enhancers	Fetal Thymus	thymus
21	chr19:51644600-51645200	Enhancers	Spleen	Spleen
22	chr19:51644600-51646000	Enhancers	Liver	Liver
23	chr19:51644800-51645000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr19:51644800-51645200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr19:51644800-51645200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
26	chr19:51644800-51647000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links