Variant report

Variant	rs273654
Chromosome Location	chr19:51672067-51672068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1055483	0.89[LWK][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs11882824	0.84[YRI][hapmap]
rs1628793	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1710362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1710375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17801681	0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs182126	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs182127	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs183893	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2455064	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273655	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273656	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273657	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273658	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs273660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs273664	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273671	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273673	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs273675	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59767553	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs273654	SIGLEC7	cis	multi-tissue	Pritchard

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51650400-51677000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51670000-51672600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:51670000-51673200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:51670200-51672800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr19:51670200-51672800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr19:51670400-51672600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr19:51670800-51672200	Weak transcription	K562	blood
8	chr19:51670800-51672400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr19:51671000-51672200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr19:51671000-51672600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr19:51671000-51673400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:51671200-51672600	Enhancers	Ovary	ovary
13	chr19:51671400-51672400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr19:51671400-51672800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr19:51671600-51672400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr19:51671600-51672600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr19:51671600-51673000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:51671600-51673400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:51671800-51672200	Enhancers	Spleen	Spleen
20	chr19:51672000-51672400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr19:51672000-51672800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr19:51672000-51681400	Weak transcription	Primary hematopoietic stem cells	blood

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