Variant report

Variant	rs17801681
Chromosome Location	chr19:51676649-51676650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC063977.1-1	chr19:51676233-51676780	NR_047529
2	lnc-AC063977.1-1	chr19:51676233-51676780	NR_047531
3	lnc-AC063977.1-1	chr19:51676233-51676780	NR_047530

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1710362	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs1710375	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs182126	0.83[ASN][1000 genomes]
rs182127	0.83[ASN][1000 genomes]
rs183893	0.91[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2455064	0.82[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs273654	0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273655	0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273656	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs273657	0.82[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs273658	0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs273660	0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273661	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273662	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273663	0.82[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273664	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273666	0.82[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273667	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273668	0.85[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]
rs273669	0.83[ASN][1000 genomes]
rs273671	0.83[ASN][1000 genomes]
rs273672	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273673	0.83[ASN][1000 genomes]
rs273674	0.82[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs273675	0.82[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51650400-51677000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:51672000-51681400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr19:51673200-51676800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:51674600-51677000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:51676400-51677800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr19:51676400-51677800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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