Variant report

Variant	rs163282
Chromosome Location	chr5:16522125-16522126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16521375..16523909-chr5:16526389..16530359,4	K562	blood:
2	chr5:16515644..16517588-chr5:16520879..16522535,2	K562	blood:
3	chr5:16515644..16518181-chr5:16520879..16523096,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs338330	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs390435	0.86[CHD][hapmap];1.00[MEX][hapmap]
rs526087	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs693889	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:16519400-16523200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:16519800-16522600	Enhancers	Right Atrium	heart
6	chr5:16519800-16531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:16520000-16524000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:16520200-16522400	Enhancers	Stomach Mucosa	stomach
9	chr5:16520200-16524000	Weak transcription	Brain Substantia Nigra	brain
10	chr5:16520200-16524200	Weak transcription	Brain Angular Gyrus	brain
11	chr5:16520200-16525000	Weak transcription	Gastric	stomach
12	chr5:16520400-16523200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:16520600-16524800	Weak transcription	Thymus	Thymus
14	chr5:16521000-16524400	Enhancers	Fetal Heart	heart
15	chr5:16521200-16522400	Enhancers	Liver	Liver
16	chr5:16521400-16523600	Enhancers	Colonic Mucosa	Colon
17	chr5:16521400-16523600	Enhancers	Fetal Intestine Small	intestine
18	chr5:16521600-16523800	Enhancers	Fetal Intestine Large	intestine
19	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:16521800-16522200	Flanking Active TSS	HepG2	liver
21	chr5:16521800-16523600	Enhancers	Pancreas	Pancrea
22	chr5:16522000-16522200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:16522000-16522200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:16522000-16522200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr5:16522000-16522200	Enhancers	Right Ventricle	heart
26	chr5:16522000-16522200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr5:16522000-16522400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:16522000-16522400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr5:16522000-16522400	Enhancers	Left Ventricle	heart
30	chr5:16522000-16522400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr5:16522000-16522600	Enhancers	A549	lung
32	chr5:16522000-16523000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:16522000-16524200	Strong transcription	Primary T cells from cord blood	blood

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