Variant report

Variant	rs526087
Chromosome Location	chr5:16520227-16520228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16519929..16521651-chr5:16530400..16531956,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs163282	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs338330	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs693889	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv275370	chr5:16517130-16520379	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16509200-16524200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:16509600-16528800	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:16509800-16521000	Weak transcription	Fetal Heart	heart
4	chr5:16511600-16522000	Weak transcription	Primary T cells from cord blood	blood
5	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr5:16519200-16520400	Enhancers	Left Ventricle	heart
7	chr5:16519200-16521200	Enhancers	Fetal Intestine Large	intestine
8	chr5:16519400-16521400	Enhancers	Pancreas	Pancrea
9	chr5:16519400-16523200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:16519600-16520400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:16519600-16520800	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr5:16519800-16520400	Enhancers	Colonic Mucosa	Colon
13	chr5:16519800-16520400	Genic enhancers	Fetal Intestine Small	intestine
14	chr5:16519800-16520400	Enhancers	Right Ventricle	heart
15	chr5:16519800-16520400	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr5:16519800-16522600	Enhancers	Right Atrium	heart
17	chr5:16519800-16531400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:16520000-16521000	Enhancers	Duodenum Mucosa	Duodenum
19	chr5:16520000-16524000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:16520200-16520400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr5:16520200-16522400	Enhancers	Stomach Mucosa	stomach
22	chr5:16520200-16524000	Weak transcription	Brain Substantia Nigra	brain
23	chr5:16520200-16524200	Weak transcription	Brain Angular Gyrus	brain
24	chr5:16520200-16525000	Weak transcription	Gastric	stomach

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