Variant report

Variant	rs163483
Chromosome Location	chr3:21584708-21584709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs163486	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs163487	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs233148	0.89[EUR][1000 genomes]
rs233152	0.90[EUR][1000 genomes]
rs233154	0.89[EUR][1000 genomes]
rs233155	0.90[EUR][1000 genomes]
rs233158	0.88[EUR][1000 genomes]
rs581936	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21561800-21587800	Weak transcription	Aorta	Aorta
2	chr3:21566600-21585400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21582000-21584800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:21582400-21585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:21584000-21586400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr3:21584200-21585400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr3:21584200-21586000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr3:21584200-21587800	Active TSS	K562	blood
10	chr3:21584400-21585200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:21584400-21585400	Active TSS	Fetal Thymus	thymus
12	chr3:21584400-21585400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr3:21584400-21586000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr3:21584400-21586000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:21584600-21585000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr3:21584600-21585000	ZNF genes & repeats	Fetal Stomach	stomach
17	chr3:21584600-21585200	Active TSS	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links