Variant report

Variant	rs163763
Chromosome Location	chr5:106874688-106874689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs163892	1.00[AMR][1000 genomes]
rs163894	1.00[AMR][1000 genomes]
rs1645027	1.00[AMR][1000 genomes]
rs344376	1.00[AMR][1000 genomes]
rs458463	1.00[AMR][1000 genomes]
rs630897	1.00[AMR][1000 genomes]
rs861080	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106842400-106880000	Weak transcription	Gastric	stomach
2	chr5:106865400-106880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:106865800-106874800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:106867000-106875600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:106867200-106879800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:106868800-106877400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:106868800-106878000	Weak transcription	Right Atrium	heart
8	chr5:106869000-106874800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:106870400-106875600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:106871000-106874800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:106871000-106878200	Weak transcription	Fetal Lung	lung
12	chr5:106871800-106875600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:106872000-106875400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:106872000-106875400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:106872000-106877800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:106872200-106874800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:106872200-106875600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:106872200-106878200	Weak transcription	Pancreas	Pancrea
19	chr5:106872400-106877800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:106873200-106874800	Enhancers	HMEC	breast
21	chr5:106873200-106875200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:106873400-106875800	Enhancers	Thymus	Thymus
23	chr5:106873400-106875800	Enhancers	A549	lung
24	chr5:106873600-106875200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:106873600-106875600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:106873600-106875800	Enhancers	Primary T cells from cord blood	blood
27	chr5:106873600-106875800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr5:106873600-106876200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:106873600-106882600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:106873800-106877200	Weak transcription	Stomach Mucosa	stomach
31	chr5:106874000-106874800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:106874000-106874800	Enhancers	HSMMtube	muscle
33	chr5:106874000-106874800	Enhancers	NH-A	brain
34	chr5:106874000-106875000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr5:106874000-106875000	Enhancers	Brain Angular Gyrus	brain
36	chr5:106874000-106875000	Flanking Active TSS	Dnd41	blood
37	chr5:106874000-106875200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:106874000-106875200	Enhancers	NHDF-Ad	bronchial
39	chr5:106874000-106876000	Enhancers	Fetal Heart	heart
40	chr5:106874000-106876600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:106874200-106874800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr5:106874200-106875000	Enhancers	Rectal Smooth Muscle	rectum
43	chr5:106874200-106875000	Enhancers	HSMM	muscle
44	chr5:106874200-106875200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:106874200-106875400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:106874200-106875800	Enhancers	Fetal Muscle Leg	muscle
47	chr5:106874200-106876000	Enhancers	Fetal Thymus	thymus
48	chr5:106874200-106876000	Enhancers	GM12878-XiMat	blood
49	chr5:106874200-106877200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:106874400-106875000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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