Variant report

Variant	rs163894
Chromosome Location	chr5:106878575-106878576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106878075..106880996-chr5:106890627..106894007,3	MCF-7	breast:
2	chr5:106867857..106870035-chr5:106875652..106879640,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs163763	1.00[AMR][1000 genomes]
rs163892	1.00[AMR][1000 genomes]
rs1645027	1.00[AMR][1000 genomes]
rs344376	1.00[AMR][1000 genomes]
rs458463	1.00[AMR][1000 genomes]
rs630897	1.00[AMR][1000 genomes]
rs861080	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106842400-106880000	Weak transcription	Gastric	stomach
2	chr5:106865400-106880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:106867200-106879800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:106873600-106882600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:106875000-106882800	Weak transcription	Brain Angular Gyrus	brain
6	chr5:106875000-106885200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:106875800-106878600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:106875800-106879000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:106875800-106879600	Weak transcription	Esophagus	oesophagus
10	chr5:106875800-106879600	Weak transcription	Left Ventricle	heart
11	chr5:106876000-106878800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:106876000-106879000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:106876000-106879400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:106876000-106879600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:106876000-106879600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:106876200-106879400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:106877000-106879800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:106877200-106879000	Enhancers	Fetal Intestine Small	intestine
19	chr5:106877200-106879000	Enhancers	Fetal Kidney	kidney
20	chr5:106877200-106879000	Enhancers	NHDF-Ad	bronchial
21	chr5:106877200-106879200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr5:106877200-106880200	Enhancers	Colon Smooth Muscle	Colon
23	chr5:106877400-106883400	Enhancers	Fetal Heart	heart
24	chr5:106877600-106879200	Flanking Active TSS	HUVEC	blood vessel
25	chr5:106877600-106880400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:106877800-106878600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:106877800-106878600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:106877800-106878800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:106877800-106879000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr5:106877800-106879200	Enhancers	Adipose Nuclei	Adipose
31	chr5:106877800-106879400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:106877800-106880400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:106877800-106880800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:106877800-106881400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:106878000-106878600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:106878000-106878600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:106878000-106878600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr5:106878000-106878800	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr5:106878000-106878800	Active TSS	Right Atrium	heart
40	chr5:106878000-106879000	Active TSS	Aorta	Aorta
41	chr5:106878000-106879000	Active TSS	A549	lung
42	chr5:106878000-106879000	Flanking Active TSS	NHEK	skin
43	chr5:106878000-106879200	Enhancers	Small Intestine	intestine
44	chr5:106878000-106879800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:106878000-106879800	Enhancers	NHLF	lung
46	chr5:106878000-106880200	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr5:106878000-106880800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr5:106878200-106878600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:106878200-106878600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:106878200-106878600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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