Variant report

Variant	rs1640704
Chromosome Location	chr7:11031631-11031632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:11022642..11024881-chr7:11031579..11033673,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1029583	0.83[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1029584	0.83[CEU][hapmap];0.95[JPT][hapmap]
rs10950334	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11975710	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13224675	0.82[ASN][1000 genomes]
rs13232272	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1483201	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1483202	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1483204	0.90[EUR][1000 genomes]
rs1547944	1.00[JPT][hapmap]
rs1636756	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1681290	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1681291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346506	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17347241	0.87[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs182594	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2110376	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190293	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs220089	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220091	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220095	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs220096	0.85[EUR][1000 genomes]
rs220097	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2301959	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2353340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353341	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2353342	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2353344	0.96[CEU][hapmap]
rs2625440	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906564	0.84[EUR][1000 genomes]
rs2906565	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs2995902	0.83[EUR][1000 genomes]
rs34166672	0.83[EUR][1000 genomes]
rs34295894	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35507980	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35580506	0.90[EUR][1000 genomes]
rs35594158	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801435	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3801441	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3801444	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3801449	0.86[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs3801450	0.87[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs3801451	0.80[EUR][1000 genomes]
rs4370426	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4720945	0.81[JPT][hapmap]
rs62440480	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6951444	0.81[JPT][hapmap]
rs7782589	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7789963	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791995	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9639071	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9768601	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv887600	chr7:10807685-11090546	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv887601	chr7:10912949-11049523	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014200-11038600	Weak transcription	Small Intestine	intestine
2	chr7:11014400-11031800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:11014400-11033200	Weak transcription	Left Ventricle	heart
4	chr7:11014600-11032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:11014600-11035000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:11014600-11035000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:11014600-11035000	Weak transcription	Placenta	Placenta
8	chr7:11014600-11035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:11014600-11038600	Weak transcription	Psoas Muscle	Psoas
10	chr7:11014600-11045400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:11014600-11092000	Weak transcription	Colonic Mucosa	Colon
12	chr7:11014800-11032200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:11014800-11032600	Weak transcription	Osteobl	bone
14	chr7:11014800-11033000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:11014800-11033000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:11014800-11033400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:11014800-11034600	Weak transcription	HMEC	breast
18	chr7:11014800-11035000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:11014800-11039200	Weak transcription	Brain Substantia Nigra	brain
20	chr7:11014800-11054200	Weak transcription	NHLF	lung
21	chr7:11014800-11075200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
23	chr7:11015000-11034000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:11015000-11037400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:11015000-11037400	Weak transcription	NHEK	skin
26	chr7:11015000-11064000	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:11015200-11108200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr7:11015600-11032200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:11016000-11033400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr7:11016800-11057200	Weak transcription	Fetal Brain Male	brain
31	chr7:11017200-11076000	Weak transcription	HUVEC	blood vessel
32	chr7:11017800-11037200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:11018600-11035200	Weak transcription	Aorta	Aorta
34	chr7:11018600-11063800	Weak transcription	Brain Angular Gyrus	brain
35	chr7:11020800-11037600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr7:11021400-11032400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr7:11022800-11032200	Weak transcription	Fetal Brain Female	brain
38	chr7:11022800-11032200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:11022800-11032400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:11022800-11032600	Weak transcription	Thymus	Thymus
41	chr7:11022800-11032800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:11022800-11033000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr7:11022800-11033200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:11022800-11033200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:11022800-11033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:11022800-11033400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:11022800-11033600	Weak transcription	Lung	lung
48	chr7:11022800-11034200	Weak transcription	Esophagus	oesophagus
49	chr7:11022800-11035000	Weak transcription	Spleen	Spleen
50	chr7:11022800-11035200	Weak transcription	Gastric	stomach

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