Variant report

Variant	rs35507980
Chromosome Location	chr7:11108590-11108591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1029583	0.84[EUR][1000 genomes]
rs1029584	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10950334	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11975710	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13224675	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13232272	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483201	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1483202	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483204	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1636756	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1640704	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1681290	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1681291	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17346506	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17347241	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs182594	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2110376	0.87[ASN][1000 genomes]
rs2190293	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs220089	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs220091	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs220094	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs220095	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220096	0.85[EUR][1000 genomes]
rs220097	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301959	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2353340	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2353341	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2353342	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2625440	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2906564	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2906565	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2995902	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34166672	0.92[EUR][1000 genomes]
rs34295894	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34665460	0.88[EUR][1000 genomes]
rs35580506	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35594158	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35648039	0.87[EUR][1000 genomes]
rs3801435	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3801441	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801444	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3801449	0.92[EUR][1000 genomes]
rs3801450	0.93[EUR][1000 genomes]
rs3801451	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4370426	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62440480	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62440485	0.85[ASN][1000 genomes]
rs6969350	0.85[EUR][1000 genomes]
rs7782589	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7789963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7791995	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7803348	0.88[EUR][1000 genomes]
rs7806039	0.84[EUR][1000 genomes]
rs9639071	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9768601	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067780	chr7:10649696-11329787	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv491695	chr7:10649696-11329787	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv949387	chr7:10815994-11281536	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv1029882	chr7:10872162-11371145	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv1031498	chr7:10882696-11110412	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv1030035	chr7:11027819-11256089	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv606194	chr7:11042905-11144078	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv887602	chr7:11071993-11220846	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv428162	chr7:11085784-11359333	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
16	nsv830901	chr7:11093455-11272219	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv916426	chr7:11095057-11201696	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv887603	chr7:11104985-11231727	Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11014800-11117400	Weak transcription	HSMMtube	muscle
2	chr7:11035800-11113000	Weak transcription	Esophagus	oesophagus
3	chr7:11035800-11113200	Weak transcription	Lung	lung
4	chr7:11035800-11123000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:11039000-11108800	Weak transcription	Psoas Muscle	Psoas
6	chr7:11046000-11128600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:11046200-11175000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:11046600-11122600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:11046600-11167800	Weak transcription	Thymus	Thymus
10	chr7:11048200-11113400	Weak transcription	Aorta	Aorta
11	chr7:11054400-11113200	Weak transcription	Pancreas	Pancrea
12	chr7:11057800-11190200	Weak transcription	Fetal Brain Male	brain
13	chr7:11064400-11112400	Weak transcription	Brain Germinal Matrix	brain
14	chr7:11064400-11112400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:11064400-11122800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:11064600-11111800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:11071800-11113000	Weak transcription	Fetal Intestine Small	intestine
18	chr7:11071800-11113000	Weak transcription	Fetal Stomach	stomach
19	chr7:11076400-11193200	Weak transcription	Ovary	ovary
20	chr7:11076800-11122200	Weak transcription	HMEC	breast
21	chr7:11077000-11130600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:11077000-11162400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:11077200-11108800	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:11078600-11122400	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:11078800-11116200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:11079200-11111600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:11086600-11143800	Weak transcription	HUVEC	blood vessel
28	chr7:11091000-11116400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:11091800-11174200	Weak transcription	Left Ventricle	heart
30	chr7:11092600-11112600	Weak transcription	Fetal Brain Female	brain
31	chr7:11092600-11122400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:11092600-11122600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:11094200-11122000	Weak transcription	HepG2	liver
34	chr7:11094600-11153400	Weak transcription	Hela-S3	cervix
35	chr7:11095600-11122800	Weak transcription	Brain Anterior Caudate	brain
36	chr7:11097400-11129000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr7:11098400-11122000	Weak transcription	A549	lung
38	chr7:11099400-11111800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:11099800-11128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:11101800-11109800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:11102200-11109400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:11102200-11112200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:11102200-11126200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:11102200-11189200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:11102400-11112800	Weak transcription	Placenta	Placenta
46	chr7:11102400-11117400	Weak transcription	GM12878-XiMat	blood
47	chr7:11102400-11121800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:11102400-11122400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr7:11102400-11122600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:11102400-11167800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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