Variant report

Variant	rs1640849
Chromosome Location	chr1:223436336-223436337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223431095..223433282-chr1:223435699..223438633,2	MCF-7	breast:
2	chr1:223428944..223431971-chr1:223436003..223438459,3	K562	blood:
3	chr1:223435954..223437626-chr1:223439880..223442185,2	K562	blood:
4	chr1:223432400..223434848-chr1:223436145..223437894,2	K562	blood:
5	chr1:223434545..223436405-chr1:223440179..223441751,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10495206	0.82[JPT][hapmap]
rs11486078	0.91[ASN][1000 genomes]
rs1341988	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs1400959	0.82[JPT][hapmap]
rs1400961	0.88[ASW][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs1400963	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs1418150	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418152	0.81[CEU][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1418153	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1640846	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17163765	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17479856	0.81[CEU][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17480087	0.82[JPT][hapmap]
rs17517952	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17518077	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17518349	0.82[JPT][hapmap]
rs17518363	0.82[JPT][hapmap]
rs17538964	0.81[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17539269	0.82[JPT][hapmap]
rs17576822	0.82[ASW][hapmap];0.81[CEU][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17577025	0.81[CEU][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17577212	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1773710	0.89[EUR][1000 genomes]
rs1773713	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1829310	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28561511	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3820596	0.83[ASW][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs61837626	0.91[ASN][1000 genomes]
rs61837627	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61837629	0.83[EUR][1000 genomes]
rs61837630	0.83[EUR][1000 genomes]
rs61837633	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61837634	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61837635	0.80[EUR][1000 genomes]
rs61837638	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61837640	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61838191	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61838192	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61838194	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61838197	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61838199	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs712857	0.83[ASW][hapmap];0.85[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs712858	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7412060	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74145795	0.83[EUR][1000 genomes]
rs7518292	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs851194	0.90[EUR][1000 genomes]
rs851196	0.87[EUR][1000 genomes]
rs851201	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs885279	0.94[ASW][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs9442040	0.91[EUR][1000 genomes]
rs9442043	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223423800-223439600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr1:223424200-223438800	Weak transcription	Ovary	ovary
3	chr1:223427400-223442000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:223432200-223440200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:223432400-223442200	Weak transcription	Pancreas	Pancrea
6	chr1:223432600-223438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:223433200-223444600	Weak transcription	Esophagus	oesophagus
8	chr1:223433600-223440400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:223434400-223437400	Weak transcription	Primary T cells from cord blood	blood

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