Variant report

Variant	rs61837635
Chromosome Location	chr1:223447198-223447199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1400961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418150	0.83[EUR][1000 genomes]
rs1418152	0.92[EUR][1000 genomes]
rs1418153	0.92[EUR][1000 genomes]
rs1640849	0.80[EUR][1000 genomes]
rs17161988	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17163762	0.81[AFR][1000 genomes]
rs17163765	0.93[EUR][1000 genomes]
rs17479856	0.91[EUR][1000 genomes]
rs17517952	0.89[EUR][1000 genomes]
rs17518077	0.89[EUR][1000 genomes]
rs17538964	0.90[EUR][1000 genomes]
rs17576822	0.93[EUR][1000 genomes]
rs17577025	0.92[EUR][1000 genomes]
rs17577212	0.89[EUR][1000 genomes]
rs1773710	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1829310	0.89[EUR][1000 genomes]
rs28561511	0.89[EUR][1000 genomes]
rs3820596	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61837629	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61837630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61837633	0.93[EUR][1000 genomes]
rs61837634	0.92[EUR][1000 genomes]
rs61837636	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61837638	0.92[EUR][1000 genomes]
rs61837640	0.92[EUR][1000 genomes]
rs61838191	0.91[EUR][1000 genomes]
rs61838192	0.91[EUR][1000 genomes]
rs61838194	0.91[EUR][1000 genomes]
rs61838197	0.89[EUR][1000 genomes]
rs61838199	0.89[EUR][1000 genomes]
rs712857	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73122234	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7412060	0.91[EUR][1000 genomes]
rs74145795	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7518292	0.91[EUR][1000 genomes]
rs851194	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs851196	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs885279	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9442040	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9442043	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223440800-223465600	Weak transcription	Ovary	ovary
2	chr1:223442600-223462200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:223443800-223472600	Weak transcription	Gastric	stomach
4	chr1:223446200-223449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:223446800-223447200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:223446800-223447200	Enhancers	K562	blood

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