Variant report

Variant	rs61837636
Chromosome Location	chr1:223449051-223449052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1400961	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418152	0.86[EUR][1000 genomes]
rs1418153	0.85[EUR][1000 genomes]
rs17161988	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17163765	0.87[EUR][1000 genomes]
rs17479856	0.84[EUR][1000 genomes]
rs17517952	0.83[EUR][1000 genomes]
rs17518077	0.83[EUR][1000 genomes]
rs17538964	0.84[EUR][1000 genomes]
rs17576822	0.87[EUR][1000 genomes]
rs17577025	0.85[EUR][1000 genomes]
rs17577212	0.83[EUR][1000 genomes]
rs1773710	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1829310	0.82[EUR][1000 genomes]
rs28561511	0.82[EUR][1000 genomes]
rs3820596	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61837629	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61837630	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61837633	0.87[EUR][1000 genomes]
rs61837634	0.85[EUR][1000 genomes]
rs61837635	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61837638	0.85[EUR][1000 genomes]
rs61837640	0.85[EUR][1000 genomes]
rs61838191	0.84[EUR][1000 genomes]
rs61838192	0.84[EUR][1000 genomes]
rs61838194	0.84[EUR][1000 genomes]
rs61838197	0.82[EUR][1000 genomes]
rs61838199	0.82[EUR][1000 genomes]
rs73122234	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7412060	0.84[EUR][1000 genomes]
rs74145795	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7518292	0.84[EUR][1000 genomes]
rs885279	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9442043	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223440800-223465600	Weak transcription	Ovary	ovary
2	chr1:223442600-223462200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:223443800-223472600	Weak transcription	Gastric	stomach
4	chr1:223446200-223449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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