Variant report
| Variant | rs1645574 |
|---|---|
| Chromosome Location | chr5:95690344-95690345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs113317 | 0.81[EUR][1000 genomes] |
| rs113318 | 0.81[EUR][1000 genomes] |
| rs1364034 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs156016 | 0.81[EUR][1000 genomes] |
| rs169240 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs200155 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271913 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs271920 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271922 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271924 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271925 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271926 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271941 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs271942 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs271943 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs271944 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs271945 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2936427 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs459608 | 0.80[EUR][1000 genomes] |
| rs6233 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6893547 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030444 | chr5:95353620-95995619 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv537810 | chr5:95353620-95995619 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:95686600-95691600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
