Variant report

Variant	rs271913
Chromosome Location	chr5:95668797-95668798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95667042..95669189-chr5:95670248..95672973,2	MCF-7	breast:
2	chr5:95667525..95669121-chr5:95669987..95672892,2	MCF-7	breast:
3	chr5:95666674..95669370-chr5:95671185..95673260,2	K562	blood:
4	chr5:95650274..95652042-chr5:95666780..95669521,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10043904	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070093	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10476668	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12518754	0.96[ASN][1000 genomes]
rs12521786	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs155968	0.81[JPT][hapmap]
rs155969	0.81[JPT][hapmap]
rs155996	0.81[JPT][hapmap]
rs156016	0.81[JPT][hapmap]
rs1645574	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs169240	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17384294	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs271920	0.90[JPT][hapmap]
rs271922	0.90[JPT][hapmap]
rs271924	0.90[JPT][hapmap]
rs271925	0.91[JPT][hapmap]
rs271926	0.90[JPT][hapmap]
rs28788264	0.89[AFR][1000 genomes]
rs4077816	0.87[ASW][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4264961	0.95[ASN][1000 genomes]
rs4283814	0.96[ASN][1000 genomes]
rs4379224	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs4502854	0.96[ASN][1000 genomes]
rs4635954	0.89[AFR][1000 genomes]
rs4869279	0.96[ASN][1000 genomes]
rs6233	0.90[JPT][hapmap]
rs62364560	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364561	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6876484	0.96[ASN][1000 genomes]
rs6881060	0.96[ASN][1000 genomes]
rs6881916	0.96[ASN][1000 genomes]
rs6885381	0.96[ASN][1000 genomes]
rs6893547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895341	0.96[ASN][1000 genomes]
rs7448311	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7708068	0.81[AFR][1000 genomes]
rs7733672	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95661000-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:95663800-95671400	Weak transcription	GM12878-XiMat	blood
3	chr5:95665400-95671800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:95666200-95671200	Weak transcription	NHEK	skin
5	chr5:95666600-95668800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr5:95666600-95669400	Enhancers	Fetal Intestine Large	intestine
7	chr5:95666600-95669400	Enhancers	HepG2	liver
8	chr5:95666800-95669200	Enhancers	Stomach Mucosa	stomach
9	chr5:95666800-95671200	Weak transcription	HSMM	muscle
10	chr5:95667000-95669000	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:95667000-95669400	Enhancers	Fetal Intestine Small	intestine
12	chr5:95667200-95668800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:95667200-95671600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:95667200-95671600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:95667200-95671800	Weak transcription	Adipose Nuclei	Adipose
16	chr5:95667200-95672000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:95667200-95672000	Weak transcription	Fetal Kidney	kidney
18	chr5:95667200-95674200	Weak transcription	Small Intestine	intestine
19	chr5:95667400-95669200	Enhancers	Fetal Heart	heart
20	chr5:95667400-95671000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:95667400-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:95667400-95671600	Weak transcription	NHDF-Ad	bronchial
23	chr5:95667600-95669200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:95667600-95669200	Enhancers	Esophagus	oesophagus
25	chr5:95667600-95671200	Weak transcription	A549	lung
26	chr5:95667600-95671200	Weak transcription	HMEC	breast
27	chr5:95667600-95671600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:95667600-95675400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr5:95667800-95669200	Weak transcription	Gastric	stomach
30	chr5:95667800-95670800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:95667800-95671000	Weak transcription	Hela-S3	cervix
32	chr5:95667800-95671400	Weak transcription	Osteobl	bone
33	chr5:95667800-95671600	Weak transcription	NHLF	lung
34	chr5:95667800-95671800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:95667800-95672000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:95668000-95669600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:95668000-95669600	Flanking Active TSS	Liver	Liver
38	chr5:95668000-95671200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr5:95668000-95671400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:95668000-95671600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:95668000-95671800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr5:95668000-95672000	Weak transcription	Fetal Lung	lung
43	chr5:95668000-95672000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr5:95668000-95672400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr5:95668200-95668800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr5:95668200-95669600	Enhancers	Right Atrium	heart
47	chr5:95668200-95671000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:95668200-95673400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:95668400-95668800	Flanking Active TSS	Pancreas	Pancrea
50	chr5:95668400-95668800	Enhancers	Skeletal Muscle Male	skeletal muscle

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