Variant report

Variant	rs7708068
Chromosome Location	chr5:95586066-95586067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10043904	0.85[AFR][1000 genomes]
rs10054303	0.80[ASN][1000 genomes]
rs10062171	0.93[ASN][1000 genomes]
rs10064683	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070093	0.85[AFR][1000 genomes]
rs10213951	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10476668	0.85[AFR][1000 genomes]
rs12518407	0.93[ASN][1000 genomes]
rs17384294	0.81[AFR][1000 genomes]
rs271913	0.81[AFR][1000 genomes]
rs271920	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs271922	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs271924	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs271925	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs271926	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs28788264	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4264961	0.83[EUR][1000 genomes]
rs4367317	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4464721	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4635954	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4635955	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869275	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55745974	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56311820	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6233	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs62364560	0.85[AFR][1000 genomes]
rs62364561	0.85[AFR][1000 genomes]
rs62366027	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366031	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6556912	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6881060	0.82[EUR][1000 genomes]
rs6885381	0.83[EUR][1000 genomes]
rs6888535	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6893547	0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6895341	0.83[EUR][1000 genomes]
rs6899076	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72787618	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7447610	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95583200-95590200	Weak transcription	A549	lung
2	chr5:95583200-95595200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:95583800-95588800	Weak transcription	NH-A	brain
4	chr5:95583800-95590800	Weak transcription	Aorta	Aorta
5	chr5:95583800-95595000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:95583800-95595000	Weak transcription	Psoas Muscle	Psoas
7	chr5:95584000-95588400	Weak transcription	Osteobl	bone
8	chr5:95584000-95590600	Weak transcription	HSMMtube	muscle
9	chr5:95584000-95592400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:95584200-95588200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:95584200-95588200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:95584200-95589000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:95584400-95588000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:95584400-95588200	Weak transcription	HSMM	muscle
15	chr5:95584600-95587600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:95584600-95590000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:95584800-95586400	Enhancers	NHEK	skin
18	chr5:95585000-95594600	Weak transcription	HepG2	liver
19	chr5:95585200-95588000	Weak transcription	HMEC	breast
20	chr5:95585400-95590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:95585400-95590800	Weak transcription	Fetal Lung	lung
22	chr5:95585600-95586200	Enhancers	Pancreas	Pancrea
23	chr5:95585800-95586400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:95586000-95586200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:95586000-95586200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:95586000-95586200	Enhancers	Esophagus	oesophagus
27	chr5:95586000-95586200	Enhancers	Left Ventricle	heart

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