Variant report

Variant	rs10213951
Chromosome Location	chr5:95568777-95568778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10043904	0.81[AFR][1000 genomes]
rs10054303	0.80[ASN][1000 genomes]
rs10062171	0.93[ASN][1000 genomes]
rs10064683	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070093	0.81[AFR][1000 genomes]
rs10476668	0.81[AFR][1000 genomes]
rs12518407	0.95[ASN][1000 genomes]
rs155968	0.81[JPT][hapmap]
rs155996	0.81[JPT][hapmap]
rs156016	0.81[JPT][hapmap]
rs271920	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs271922	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs271924	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs271925	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs271926	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs28788264	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4077816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4264961	0.81[EUR][1000 genomes]
rs4367317	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4464721	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4635954	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4635955	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869275	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55745974	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56311820	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6233	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs62364560	0.81[AFR][1000 genomes]
rs62364561	0.81[AFR][1000 genomes]
rs62366027	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62366031	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6556912	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6881060	0.81[EUR][1000 genomes]
rs6885381	0.81[EUR][1000 genomes]
rs6888535	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6893547	0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6895341	0.81[EUR][1000 genomes]
rs6899076	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72787618	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7447610	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7708068	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv518730	chr5:95547545-95569569	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95564000-95569800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:95564000-95571000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95564400-95572000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:95565200-95570200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:95565200-95570600	Weak transcription	NHDF-Ad	bronchial
6	chr5:95565200-95570600	Weak transcription	Osteobl	bone
7	chr5:95565200-95571000	Weak transcription	Brain Angular Gyrus	brain
8	chr5:95565200-95578400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:95565400-95569800	Weak transcription	Fetal Heart	heart
10	chr5:95565400-95570800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:95565400-95570800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:95566000-95579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:95566200-95569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links