Variant report

Variant	rs10070093
Chromosome Location	chr5:95652612-95652613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10043904	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10064683	0.81[AFR][1000 genomes]
rs10213951	0.81[AFR][1000 genomes]
rs10476668	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12518754	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12521786	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17384294	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs271913	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs271920	0.84[JPT][hapmap]
rs271922	0.84[JPT][hapmap]
rs271924	0.84[JPT][hapmap]
rs271925	0.85[JPT][hapmap]
rs271926	0.84[JPT][hapmap]
rs28788264	0.94[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4077816	0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4264961	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4283814	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379224	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4502854	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4635954	0.94[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4869279	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55745974	0.81[AFR][1000 genomes]
rs6233	0.84[JPT][hapmap]
rs62364560	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62364561	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876484	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6881060	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6881916	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6885381	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6893547	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6895341	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72787618	0.83[AFR][1000 genomes]
rs7448311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7708068	0.85[AFR][1000 genomes]
rs7733672	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95634000-95656400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:95644600-95658000	Weak transcription	Aorta	Aorta
3	chr5:95647400-95656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95651200-95652800	Enhancers	HepG2	liver
5	chr5:95651400-95657400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:95651600-95652800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:95652000-95652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:95652000-95652800	Enhancers	Liver	Liver
9	chr5:95652000-95653000	Enhancers	Fetal Intestine Large	intestine
10	chr5:95652200-95653400	Weak transcription	Fetal Heart	heart
11	chr5:95652200-95654000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:95652200-95655000	Weak transcription	GM12878-XiMat	blood
13	chr5:95652400-95652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:95652400-95653400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:95652400-95654400	Weak transcription	Psoas Muscle	Psoas
16	chr5:95652400-95656200	Weak transcription	NHEK	skin
17	chr5:95652400-95656400	Weak transcription	NHLF	lung
18	chr5:95652600-95652800	Enhancers	A549	lung
19	chr5:95652600-95656400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:95652600-95656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:95652600-95657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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