Variant report

Variant	rs6881060
Chromosome Location	chr5:95617154-95617155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10043904	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10064683	0.81[EUR][1000 genomes]
rs10070093	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10213951	0.81[EUR][1000 genomes]
rs10476668	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518754	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12521786	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271913	0.96[ASN][1000 genomes]
rs28788264	0.82[ASN][1000 genomes]
rs3922468	0.81[AFR][1000 genomes]
rs4077816	0.82[EUR][1000 genomes]
rs4264961	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4283814	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367317	0.82[EUR][1000 genomes]
rs4502854	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635954	0.83[ASN][1000 genomes]
rs4635955	0.82[EUR][1000 genomes]
rs4869275	0.82[EUR][1000 genomes]
rs4869279	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745974	0.81[EUR][1000 genomes]
rs56311820	0.82[EUR][1000 genomes]
rs62364560	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62364561	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62366027	0.81[EUR][1000 genomes]
rs62366031	0.82[EUR][1000 genomes]
rs6556912	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6876484	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881916	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885381	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888535	0.82[EUR][1000 genomes]
rs6893547	0.96[ASN][1000 genomes]
rs6895341	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899076	0.80[EUR][1000 genomes]
rs72787618	0.83[EUR][1000 genomes]
rs7447610	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7448311	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708068	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95613000-95623800	Weak transcription	HSMM	muscle
3	chr5:95614200-95617200	Weak transcription	Esophagus	oesophagus
4	chr5:95614400-95617400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:95614800-95617400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:95614800-95617400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:95615400-95617200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:95615600-95617400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:95616000-95617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:95616000-95618000	Enhancers	HMEC	breast
11	chr5:95616200-95617600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:95616200-95617600	Enhancers	NHDF-Ad	bronchial
13	chr5:95616400-95617200	Enhancers	GM12878-XiMat	blood
14	chr5:95616400-95617800	Enhancers	NHEK	skin
15	chr5:95616400-95623000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:95616600-95617200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:95616800-95617200	Enhancers	Pancreatic Islets	Pancreatic Islet

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