Variant report

Variant	rs1647561
Chromosome Location	chr18:11832877-11832878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1249630	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12607391	0.83[ASN][1000 genomes]
rs12607581	0.87[ASN][1000 genomes]
rs12965697	0.87[AFR][1000 genomes]
rs1786568	0.82[AFR][1000 genomes]
rs1786569	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1786570	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1786573	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4324196	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56206349	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60682158	0.84[ASN][1000 genomes]
rs72868650	0.83[ASN][1000 genomes]
rs9946370	0.84[ASN][1000 genomes]
rs9966733	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11822800-11836600	Weak transcription	Hela-S3	cervix
2	chr18:11825400-11849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:11829400-11833600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:11829600-11833800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:11829600-11833800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr18:11830800-11839600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:11830800-11849000	Weak transcription	A549	lung
8	chr18:11831000-11836800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:11831400-11834800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:11831800-11833600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr18:11831800-11842600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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