Variant report

Variant	rs9966733
Chromosome Location	chr18:11828828-11828829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10468681	0.81[CEU][hapmap]
rs1249630	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs12607391	0.97[ASN][1000 genomes]
rs12607811	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12965108	0.81[CEU][hapmap]
rs12965256	0.81[CEU][hapmap]
rs1364632	0.81[CEU][hapmap]
rs1613471	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1614379	0.88[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1617064	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1647553	0.80[JPT][hapmap]
rs1647554	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1647555	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1647557	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1647558	0.87[CEU][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1647559	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1647560	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1647561	0.83[ASN][1000 genomes]
rs16976671	0.81[CEU][hapmap]
rs16976714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16976735	0.82[ASN][1000 genomes]
rs16976739	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs16976750	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1786563	0.81[JPT][hapmap]
rs1786564	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1786565	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1786566	0.87[CEU][hapmap];0.80[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1786567	0.88[CEU][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1786569	1.00[CEU][hapmap]
rs1786573	0.94[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs2161961	0.81[CEU][hapmap]
rs2276134	0.91[ASN][1000 genomes]
rs28510090	0.84[ASN][1000 genomes]
rs28690612	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60682158	0.98[ASN][1000 genomes]
rs60821058	0.84[ASN][1000 genomes]
rs7231090	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72868650	0.97[ASN][1000 genomes]
rs72868655	0.90[ASN][1000 genomes]
rs72868658	0.90[ASN][1000 genomes]
rs9303749	0.81[CEU][hapmap]
rs9946370	0.98[ASN][1000 genomes]
rs9952489	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9955115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9959605	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9962861	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9962908	1.00[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9963000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9963158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9963378	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9963448	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9963630	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11783400-11829200	Weak transcription	Right Atrium	heart
2	chr18:11808000-11830600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:11822800-11832200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:11822800-11836600	Weak transcription	Hela-S3	cervix
5	chr18:11823800-11829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:11824000-11829000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:11825400-11849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr18:11827000-11829000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:11827000-11831600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:11827200-11831200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:11828200-11829600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:11828600-11829400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:11828800-11829200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr18:11828800-11829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr18:11828800-11829600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr18:11828800-11829600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr18:11828800-11829600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr18:11828800-11829600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr18:11828800-11829600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr18:11828800-11829600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr18:11828800-11829600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr18:11828800-11830200	Enhancers	HUES64 Cell Line	embryonic stem cell

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