Variant report

Variant	rs164838
Chromosome Location	chr5:106980968-106980969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs154190	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs164685	0.84[ASN][1000 genomes]
rs164687	0.83[ASN][1000 genomes]
rs164840	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.84[ASN][1000 genomes]
rs164841	0.81[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs164842	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs26727	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs26731	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26736	0.91[GIH][hapmap]
rs352614	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs352615	0.86[JPT][hapmap]
rs35552	0.94[GIH][hapmap]
rs469425	0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
3	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:106972600-106981800	Weak transcription	HMEC	breast
6	chr5:106972800-106983400	Weak transcription	Fetal Lung	lung
7	chr5:106973200-106981600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:106973400-106982000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:106976600-106981400	Weak transcription	Fetal Heart	heart
10	chr5:106976600-106981800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:106976600-106984600	Weak transcription	A549	lung
12	chr5:106976600-106987200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
14	chr5:106977800-106981200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:106979200-106985800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:106979400-106985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:106979400-106988600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:106980000-106981200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:106980800-106982000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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