Variant report

Variant	rs35552
Chromosome Location	chr5:107000504-107000505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107000146..107001878-chr5:107002234..107005030,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10052932	0.99[ASN][1000 genomes]
rs1490827	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs164838	0.94[GIH][hapmap]
rs164840	0.86[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap]
rs164841	0.86[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap]
rs164842	0.86[CEU][hapmap]
rs165263	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs26731	0.94[GIH][hapmap]
rs26736	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs357110	0.98[ASN][1000 genomes]
rs469425	0.86[CEU][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35552	FER	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
4	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
5	chr5:106991800-107001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:106992000-107001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:106992000-107002000	Weak transcription	HMEC	breast
8	chr5:106992200-107000800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:106992200-107002000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:106997200-107000800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:106997200-107004200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:106997400-107000800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:106997400-107000800	Weak transcription	Left Ventricle	heart
14	chr5:106997400-107001000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:106997400-107004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:106997400-107004600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:106997600-107000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:106997600-107001000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:106998000-107001000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:106998000-107001000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:106998000-107003800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:106998200-107000800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:106999200-107000800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:106999200-107001000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:106999400-107001800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:106999600-107000800	Enhancers	A549	lung
27	chr5:106999600-107001400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:106999800-107001000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr5:106999800-107001400	Enhancers	HUVEC	blood vessel
30	chr5:107000000-107006800	Active TSS	GM12878-XiMat	blood
31	chr5:107000200-107001000	Enhancers	NHEK	skin
32	chr5:107000200-107001400	Enhancers	NHDF-Ad	bronchial
33	chr5:107000400-107003800	Enhancers	Fetal Heart	heart

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