Variant report

Variant	rs164859
Chromosome Location	chr5:14274009-14274010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12522960	0.95[EUR][1000 genomes]
rs154150	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs164860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs164862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs164863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs165092	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs165094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs165095	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs165096	0.88[ASN][1000 genomes]
rs16903338	0.90[JPT][hapmap]
rs2440982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs30618	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs30621	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs30626	0.89[ASN][1000 genomes]
rs30627	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs30628	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs30629	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs30630	0.90[ASN][1000 genomes]
rs30631	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs30632	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs30633	0.82[CHB][hapmap]
rs30635	0.83[ASN][1000 genomes]
rs354303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356026	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs356027	0.90[ASN][1000 genomes]
rs356028	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356029	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs42253	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4701604	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56334634	0.89[ASN][1000 genomes]
rs58221971	0.86[ASN][1000 genomes]
rs6554849	0.86[ASN][1000 genomes]
rs6554850	0.89[ASN][1000 genomes]
rs6554851	0.89[ASN][1000 genomes]
rs7380307	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs7700787	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14265200-14293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14265400-14277200	Weak transcription	Thymus	Thymus
3	chr5:14265400-14284600	Weak transcription	Stomach Mucosa	stomach
4	chr5:14265400-14286600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:14268600-14291000	Weak transcription	Fetal Kidney	kidney
6	chr5:14269200-14280000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:14269200-14286400	Weak transcription	Pancreas	Pancrea
8	chr5:14269200-14286600	Weak transcription	Spleen	Spleen
9	chr5:14270200-14290800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:14270400-14276200	Weak transcription	Psoas Muscle	Psoas
11	chr5:14270400-14276400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:14270400-14276400	Weak transcription	Left Ventricle	heart
13	chr5:14270400-14277600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr5:14270400-14278200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:14270400-14279800	Weak transcription	Ovary	ovary
16	chr5:14270400-14280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:14270400-14280400	Weak transcription	Placenta	Placenta
18	chr5:14270400-14280400	Weak transcription	Fetal Thymus	thymus
19	chr5:14270400-14280600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:14270400-14280600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:14270400-14280600	Weak transcription	Lung	lung
22	chr5:14270400-14283200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:14270400-14284400	Weak transcription	Colonic Mucosa	Colon
24	chr5:14270400-14284600	Weak transcription	Brain Germinal Matrix	brain
25	chr5:14270400-14284800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:14270400-14284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:14270400-14286400	Weak transcription	Fetal Intestine Small	intestine
28	chr5:14270400-14286800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:14270400-14288800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:14270400-14289400	Weak transcription	Gastric	stomach
31	chr5:14270400-14293000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:14270400-14305200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:14270400-14313600	Weak transcription	Small Intestine	intestine
34	chr5:14270600-14274600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:14270600-14279800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr5:14270800-14274600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:14270800-14276200	Weak transcription	Brain Anterior Caudate	brain
38	chr5:14270800-14276200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr5:14270800-14276600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr5:14270800-14276800	Weak transcription	Fetal Brain Female	brain
41	chr5:14270800-14277400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:14270800-14279800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr5:14270800-14280200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:14270800-14280200	Weak transcription	Fetal Lung	lung
45	chr5:14270800-14280200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr5:14270800-14280400	Weak transcription	Fetal Muscle Leg	muscle
47	chr5:14270800-14280600	Weak transcription	Fetal Intestine Large	intestine
48	chr5:14270800-14281400	Weak transcription	Fetal Stomach	stomach
49	chr5:14270800-14282000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr5:14270800-14286800	Weak transcription	Fetal Brain Male	brain

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