Variant report

Variant	rs356028
Chromosome Location	chr5:14281668-14281669
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14107611..14110388-chr5:14277452..14281941,4	MCF-7	breast:
2	chr5:14268388..14270560-chr5:14279679..14282134,3	MCF-7	breast:
3	chr5:14279019..14280717-chr5:14281044..14283924,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12522960	0.95[EUR][1000 genomes]
rs151899	0.84[JPT][hapmap]
rs154150	0.80[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs164859	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs164860	1.00[CEU][hapmap];0.95[CHB][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs164862	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs164863	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs165092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs165094	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs165095	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs165096	0.87[ASN][1000 genomes]
rs16903338	0.80[CHB][hapmap]
rs2440982	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs30618	0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs30621	0.90[CHB][hapmap];0.92[ASN][1000 genomes]
rs30625	0.82[ASN][1000 genomes]
rs30626	0.96[ASN][1000 genomes]
rs30627	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs30628	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs30629	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs30630	0.97[ASN][1000 genomes]
rs30631	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs30632	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs30633	0.80[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs30635	0.80[ASN][1000 genomes]
rs354303	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs356026	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs356027	0.97[ASN][1000 genomes]
rs356029	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42253	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4701604	0.89[EUR][1000 genomes]
rs556928	0.83[JPT][hapmap]
rs56334634	0.85[ASN][1000 genomes]
rs58221971	0.88[ASN][1000 genomes]
rs6554849	0.88[ASN][1000 genomes]
rs6554850	0.85[ASN][1000 genomes]
rs6554851	0.85[ASN][1000 genomes]
rs7380307	0.81[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7700787	0.80[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14265200-14293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14265400-14284600	Weak transcription	Stomach Mucosa	stomach
3	chr5:14265400-14286600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:14268600-14291000	Weak transcription	Fetal Kidney	kidney
5	chr5:14269200-14286400	Weak transcription	Pancreas	Pancrea
6	chr5:14269200-14286600	Weak transcription	Spleen	Spleen
7	chr5:14270200-14290800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:14270400-14283200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:14270400-14284400	Weak transcription	Colonic Mucosa	Colon
10	chr5:14270400-14284600	Weak transcription	Brain Germinal Matrix	brain
11	chr5:14270400-14284800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:14270400-14284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:14270400-14286400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:14270400-14286800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:14270400-14288800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:14270400-14289400	Weak transcription	Gastric	stomach
17	chr5:14270400-14293000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:14270400-14305200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:14270400-14313600	Weak transcription	Small Intestine	intestine
20	chr5:14270800-14282000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:14270800-14286800	Weak transcription	Fetal Brain Male	brain
22	chr5:14270800-14293000	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:14271000-14295800	Weak transcription	Brain Angular Gyrus	brain
24	chr5:14271800-14284400	Weak transcription	Aorta	Aorta
25	chr5:14273600-14284200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:14276600-14281800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:14276600-14284600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:14276800-14290800	Weak transcription	Esophagus	oesophagus
29	chr5:14277200-14291000	Weak transcription	Brain Anterior Caudate	brain
30	chr5:14277600-14283000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:14277800-14284600	Weak transcription	Primary T cells from cord blood	blood
32	chr5:14277800-14286800	Weak transcription	Brain Substantia Nigra	brain
33	chr5:14278000-14284600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr5:14278400-14283000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr5:14278400-14284200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:14278600-14284400	Weak transcription	Colon Smooth Muscle	Colon
38	chr5:14278600-14284800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:14278600-14285800	Strong transcription	HSMM	muscle
40	chr5:14278600-14296200	Strong transcription	NH-A	brain
41	chr5:14279200-14285400	Strong transcription	Primary B cells from cord blood	blood
42	chr5:14279400-14284200	Strong transcription	NHDF-Ad	bronchial
43	chr5:14279600-14284000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:14279600-14284600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr5:14279600-14284800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:14279600-14285000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr5:14279600-14295600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr5:14279800-14281800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:14279800-14281800	Strong transcription	Osteobl	bone
50	chr5:14279800-14282400	Strong transcription	NHLF	lung

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