Variant report

Variant	rs1654369
Chromosome Location	chr19:38592251-38592252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10404957	0.91[ASN][1000 genomes]
rs12982972	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12983797	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1623915	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1654356	0.89[EUR][1000 genomes]
rs1654363	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1654366	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1654368	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1725472	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1725474	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1725489	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1725513	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2099340	0.83[ASN][1000 genomes]
rs2384778	0.83[ASN][1000 genomes]
rs2569412	0.81[ASN][1000 genomes]
rs332843	0.83[ASN][1000 genomes]
rs332844	0.83[ASN][1000 genomes]
rs332848	0.83[ASN][1000 genomes]
rs332849	0.83[ASN][1000 genomes]
rs332850	0.83[ASN][1000 genomes]
rs332851	0.82[ASN][1000 genomes]
rs332855	0.82[ASN][1000 genomes]
rs332856	0.81[ASN][1000 genomes]
rs332858	0.82[ASN][1000 genomes]
rs332864	0.82[ASN][1000 genomes]
rs4802251	0.83[ASN][1000 genomes]
rs4803746	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4803757	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6508765	0.83[ASN][1000 genomes]
rs705507	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8100144	0.83[ASN][1000 genomes]
rs8101826	0.82[ASN][1000 genomes]
rs8109695	0.83[ASN][1000 genomes]
rs8109799	0.83[ASN][1000 genomes]
rs8111180	0.85[ASN][1000 genomes]
rs8112798	0.83[ASN][1000 genomes]
rs855614	0.86[ASN][1000 genomes]
rs855632	0.91[ASN][1000 genomes]
rs9941474	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38551200-38613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr19:38567600-38605400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:38573600-38610000	Strong transcription	Fetal Intestine Large	intestine
4	chr19:38580400-38594800	Weak transcription	HSMMtube	muscle
5	chr19:38580600-38596000	Weak transcription	Stomach Mucosa	stomach
6	chr19:38581600-38610000	Weak transcription	Psoas Muscle	Psoas
7	chr19:38584400-38597000	Weak transcription	Right Atrium	heart
8	chr19:38584800-38602400	Weak transcription	Fetal Brain Male	brain
9	chr19:38584800-38602400	Weak transcription	Fetal Heart	heart
10	chr19:38586000-38592600	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr19:38587000-38605400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr19:38587200-38603200	Strong transcription	Primary B cells from cord blood	blood
13	chr19:38587200-38613600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr19:38587400-38613400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr19:38588400-38593400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr19:38588600-38597200	Strong transcription	Osteobl	bone
17	chr19:38588600-38604000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr19:38588800-38606600	Strong transcription	Liver	Liver
19	chr19:38589200-38593000	Strong transcription	Colonic Mucosa	Colon
20	chr19:38589200-38606800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr19:38589400-38592800	Strong transcription	HepG2	liver
22	chr19:38589400-38593400	Strong transcription	Primary T cells from cord blood	blood
23	chr19:38589400-38595200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:38590000-38592800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr19:38590000-38593000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr19:38590000-38593400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr19:38590000-38593400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr19:38590000-38593800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:38590000-38594000	Strong transcription	Rectal Smooth Muscle	rectum
30	chr19:38590200-38592600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr19:38590200-38592600	Strong transcription	Fetal Kidney	kidney
32	chr19:38590200-38593200	Strong transcription	Ovary	ovary
33	chr19:38590200-38594000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr19:38590200-38597200	Strong transcription	Gastric	stomach
35	chr19:38590200-38605200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr19:38590200-38605800	Strong transcription	Adipose Nuclei	Adipose
37	chr19:38590200-38606600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr19:38590200-38606600	Strong transcription	Stomach Smooth Muscle	stomach
39	chr19:38590200-38611000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr19:38590400-38592600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr19:38590400-38592600	Strong transcription	Brain Germinal Matrix	brain
42	chr19:38590400-38592600	Strong transcription	Brain Hippocampus Middle	brain
43	chr19:38590400-38592600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:38590400-38592800	Strong transcription	Brain Anterior Caudate	brain
45	chr19:38590400-38592800	Strong transcription	Pancreatic Islets	Pancreatic Islet
46	chr19:38590400-38593200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr19:38590400-38593200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:38590400-38593200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr19:38590400-38593400	Strong transcription	Brain Angular Gyrus	brain
50	chr19:38590400-38593400	Strong transcription	Right Ventricle	heart

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