Variant report

Variant	rs1654722
Chromosome Location	chr8:108391528-108391529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10087648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs10097816	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10100579	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10101127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1347183	0.83[YRI][hapmap]
rs1583301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1583303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1631144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1631849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1632130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1654704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1654707	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1654709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1654712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1654714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1654715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1654718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1654720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1672181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1672183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1672184	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1672185	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1672186	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1672190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1672191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs1672193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1672195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs16876090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16876122	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2916079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2916080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2916082	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3019114	0.93[YRI][hapmap]
rs6981438	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs892245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs892246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs892247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108345200-108393200	Weak transcription	Aorta	Aorta
2	chr8:108382200-108392400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:108382200-108393000	Weak transcription	Ovary	ovary
4	chr8:108387000-108394800	Weak transcription	Fetal Heart	heart
5	chr8:108387200-108395200	Weak transcription	Psoas Muscle	Psoas
6	chr8:108388600-108392400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:108388800-108394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
9	chr8:108390000-108394600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:108390000-108394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:108390000-108395400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:108390200-108395200	Weak transcription	Osteobl	bone
13	chr8:108390400-108397000	Weak transcription	Fetal Lung	lung
14	chr8:108390800-108391600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:108390800-108392800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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