Variant report

Variant	rs6981438
Chromosome Location	chr8:108379755-108379756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087648	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10101127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1583301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1583302	0.81[ASN][1000 genomes]
rs1583303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1631144	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1631849	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1632130	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654703	0.81[ASN][1000 genomes]
rs1654704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1654707	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1654708	0.81[ASN][1000 genomes]
rs1654709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654712	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654714	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654715	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1654722	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672183	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672190	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672191	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672193	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672195	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1672197	0.81[ASN][1000 genomes]
rs16876090	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16876122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2445361	0.84[EUR][1000 genomes]
rs2514888	0.80[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2916079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2916080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2916082	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2959351	0.81[ASN][1000 genomes]
rs3019112	0.81[ASN][1000 genomes]
rs34397043	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34977556	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35611738	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35899249	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4357258	0.84[EUR][1000 genomes]
rs4397378	0.80[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs4523226	0.82[CEU][hapmap]
rs55736442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71524707	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs892245	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs892246	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs892247	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108345200-108393200	Weak transcription	Aorta	Aorta
2	chr8:108370200-108381200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:108371200-108380400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:108371400-108389400	Weak transcription	Osteobl	bone
5	chr8:108372400-108384600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:108375600-108386400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:108375800-108381200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:108375800-108385000	Weak transcription	Fetal Heart	heart
9	chr8:108379200-108382800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:108379600-108379800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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