Variant report

Variant	rs35899249
Chromosome Location	chr8:108390076-108390077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10087648	0.81[ASN][1000 genomes]
rs10100823	0.81[ASN][1000 genomes]
rs13260972	0.81[ASN][1000 genomes]
rs1615900	0.81[ASN][1000 genomes]
rs1631144	0.81[ASN][1000 genomes]
rs1632130	0.81[ASN][1000 genomes]
rs1654709	0.81[ASN][1000 genomes]
rs1654712	0.81[ASN][1000 genomes]
rs1654714	0.81[ASN][1000 genomes]
rs1654715	0.81[ASN][1000 genomes]
rs1654718	0.81[ASN][1000 genomes]
rs1654720	0.81[ASN][1000 genomes]
rs1672181	0.81[ASN][1000 genomes]
rs1672183	0.81[ASN][1000 genomes]
rs1672184	0.81[ASN][1000 genomes]
rs1672189	0.81[ASN][1000 genomes]
rs1672191	0.81[ASN][1000 genomes]
rs1672193	0.81[ASN][1000 genomes]
rs1672195	0.81[ASN][1000 genomes]
rs16876090	0.84[EUR][1000 genomes]
rs16876122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2445361	0.82[EUR][1000 genomes]
rs2514888	0.82[EUR][1000 genomes]
rs2959350	0.81[ASN][1000 genomes]
rs34397043	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34977556	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35611738	0.84[EUR][1000 genomes]
rs4357258	0.82[EUR][1000 genomes]
rs55736442	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6981438	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71524707	0.84[EUR][1000 genomes]
rs892245	0.81[ASN][1000 genomes]
rs892246	0.81[ASN][1000 genomes]
rs892247	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108345200-108393200	Weak transcription	Aorta	Aorta
2	chr8:108382200-108392400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:108382200-108393000	Weak transcription	Ovary	ovary
4	chr8:108385000-108390400	Enhancers	Fetal Lung	lung
5	chr8:108387000-108394800	Weak transcription	Fetal Heart	heart
6	chr8:108387200-108395200	Weak transcription	Psoas Muscle	Psoas
7	chr8:108388600-108392400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:108388800-108390800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:108388800-108394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:108389400-108390200	Enhancers	Osteobl	bone
11	chr8:108389800-108401200	Weak transcription	Fetal Kidney	kidney
12	chr8:108390000-108390800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:108390000-108394600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:108390000-108394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:108390000-108395400	Weak transcription	Muscle Satellite Cultured Cells	--

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