Variant report

Variant	rs1655006
Chromosome Location	chr8:122001129-122001130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1433396	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1433398	0.87[EUR][1000 genomes]
rs1560770	0.86[EUR][1000 genomes]
rs1560772	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1613681	0.89[EUR][1000 genomes]
rs1631704	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1655000	0.90[EUR][1000 genomes]
rs1714640	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1714643	0.89[EUR][1000 genomes]
rs1714644	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1714645	0.89[EUR][1000 genomes]
rs1714662	0.82[EUR][1000 genomes]
rs1714670	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17196510	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2043374	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570067	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs892306	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891425	chr8:121875083-122025559	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121989800-122001200	Weak transcription	Osteobl	bone
2	chr8:121997800-122003000	Enhancers	Fetal Stomach	stomach
3	chr8:121998000-122001600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:121998200-122001600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:121998200-122001600	Weak transcription	HSMM	muscle
6	chr8:121999000-122001200	Weak transcription	Fetal Lung	lung
7	chr8:121999600-122001400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:122000600-122001800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:122000800-122002200	Enhancers	Fetal Brain Male	brain
10	chr8:122000800-122002800	Enhancers	NHLF	lung
11	chr8:122001000-122001200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:122001000-122002200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:122001000-122003000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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