Variant report
Variant | rs1714643 |
---|---|
Chromosome Location | chr8:122019618-122019619 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1433396 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1433397 | 0.80[EUR][1000 genomes] |
rs1433398 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1560770 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1560772 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1613681 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1631704 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1655000 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1655006 | 0.89[EUR][1000 genomes] |
rs1714640 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1714642 | 0.80[EUR][1000 genomes] |
rs1714644 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs1714645 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1714662 | 0.84[EUR][1000 genomes] |
rs1714670 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs17196510 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2043374 | 0.87[EUR][1000 genomes] |
rs2570067 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs892306 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv465790 | chr8:121853405-122185415 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv612114 | chr8:121853405-122185415 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv891424 | chr8:121873345-122393258 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv891425 | chr8:121875083-122025559 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | esv1844734 | chr8:121928250-122283585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:122017800-122020400 | Weak transcription | Hela-S3 | cervix |