Variant report

Variant	rs1659815
Chromosome Location	chr7:138307254-138307255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11770381	0.82[YRI][hapmap]
rs1673227	0.80[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17837468	0.82[YRI][hapmap]
rs3734944	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs3734945	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs3734946	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3356657	chr7:138304612-138308910	Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:138297400-138307400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:138297600-138318800	Weak transcription	Hela-S3	cervix
4	chr7:138304800-138308600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:138306000-138309400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:138306000-138311800	Weak transcription	Fetal Brain Female	brain
7	chr7:138306200-138307400	Weak transcription	Fetal Brain Male	brain
8	chr7:138306400-138307400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:138306600-138307400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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