Variant report

Variant	rs17837468
Chromosome Location	chr7:138309274-138309275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1659815	0.82[YRI][hapmap]
rs1673224	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138297600-138318800	Weak transcription	Hela-S3	cervix
2	chr7:138306000-138309400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:138306000-138311800	Weak transcription	Fetal Brain Female	brain
4	chr7:138307400-138309400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:138307400-138312400	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:138308400-138309400	Enhancers	Primary T cells from cord blood	blood
7	chr7:138308400-138309800	Weak transcription	Fetal Brain Male	brain
8	chr7:138308600-138309400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:138308600-138310400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:138308600-138310400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:138308800-138311800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:138309000-138309600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:138309000-138312000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr7:138309000-138312200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr7:138309200-138309600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr7:138309200-138309800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr7:138309200-138311400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr7:138309200-138311600	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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