Variant report

Variant	rs1659820
Chromosome Location	chr7:138300598-138300599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12707390	0.83[AFR][1000 genomes]
rs1659821	0.82[AFR][1000 genomes]
rs1673222	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1673224	0.81[AFR][1000 genomes]
rs1673225	0.81[AFR][1000 genomes]
rs34492435	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3477526	chr7:138300133-138300618	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv6486	chr7:138300179-138300635	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
3	chr7:138296400-138303600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:138297400-138307400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:138297600-138318800	Weak transcription	Hela-S3	cervix
6	chr7:138298800-138301000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:138298800-138301000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:138298800-138303200	Weak transcription	Pancreas	Pancrea
9	chr7:138299000-138300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:138299000-138303400	Weak transcription	Liver	Liver
11	chr7:138299200-138301000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:138299200-138303600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:138299800-138302200	Weak transcription	Fetal Kidney	kidney
14	chr7:138300000-138302400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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