Variant report

Variant	rs12707390
Chromosome Location	chr7:138297373-138297374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11770381	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11974460	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1628052	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1659820	0.83[AFR][1000 genomes]
rs1659821	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1673221	0.83[EUR][1000 genomes]
rs1673224	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1673225	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3360415	chr7:138296108-138297623	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138293200-138298000	Weak transcription	Fetal Lung	lung
3	chr7:138293200-138298800	Weak transcription	Fetal Kidney	kidney
4	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:138293600-138297400	Weak transcription	HSMMtube	muscle
6	chr7:138295800-138297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:138296000-138297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:138296200-138298200	Weak transcription	Pancreas	Pancrea
9	chr7:138296400-138297400	Weak transcription	HepG2	liver
10	chr7:138296400-138297600	Weak transcription	Liver	Liver
11	chr7:138296400-138298000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:138296400-138303600	Weak transcription	Fetal Intestine Small	intestine
13	chr7:138297200-138297400	Enhancers	Primary hematopoietic stem cells	blood
14	chr7:138297200-138299200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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