Variant report

Variant	rs11974460
Chromosome Location	chr7:138297596-138297597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11770381	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12707390	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1628052	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1659818	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1659821	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1673221	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1673222	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1673224	0.91[EUR][1000 genomes]
rs1673225	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34492435	0.84[EUR][1000 genomes]
rs35879025	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3360415	chr7:138296108-138297623	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138293200-138298000	Weak transcription	Fetal Lung	lung
3	chr7:138293200-138298800	Weak transcription	Fetal Kidney	kidney
4	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:138295800-138297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:138296000-138297800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:138296200-138298200	Weak transcription	Pancreas	Pancrea
8	chr7:138296400-138297600	Weak transcription	Liver	Liver
9	chr7:138296400-138298000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:138296400-138303600	Weak transcription	Fetal Intestine Small	intestine
11	chr7:138297200-138299200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:138297400-138300000	Enhancers	HepG2	liver
13	chr7:138297400-138307400	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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