Variant report

Variant	rs1659818
Chromosome Location	chr7:138302409-138302410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11974460	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1628052	0.82[EUR][1000 genomes]
rs1673219	0.82[EUR][1000 genomes]
rs1673222	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34492435	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35879025	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
3	chr7:138296400-138303600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:138297400-138307400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:138297600-138318800	Weak transcription	Hela-S3	cervix
6	chr7:138298800-138303200	Weak transcription	Pancreas	Pancrea
7	chr7:138299000-138303400	Weak transcription	Liver	Liver
8	chr7:138299200-138303600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:138301000-138302600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:138302400-138302600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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